Nikon N-STORM System

Sunday, 20 March, 2022
Tags: Microscopes

The Nikon N-STORM system is one of the crown jewels among Nikon’s microscope systems. Stochastic Optical Reconstruction Microscopy (STORM) has been a revolutionary technique that achieves super-resolution by temporally separating the registration of individual fluorophores. The most used case is the application of photo-switchable dyes that have a reversible dark state in the appropriate medium. A powerful laser is used to drive almost all of these molecules into a dark state. Periodically a few molecules return to the ground state and due to continuous illumination are excited again and again until driven into dark state again. Recording these spatially separated blinking events and fitting the centroid of the Point Spread Function (PSF) results in a point list. This point list will finally outline the investigated structure and enables the system to reach about tenfold increase in lateral/axial resolution (20-60nm laterally and 50-100nm axially).

 

The microscope is a TIRF microscope equipped with a series of lenses that focus the laser onto the specimen to further increase the local light intensity 4x or 8X. The microscope is equipped with Nikon’s cutting edge Perfect Focus System that compensates for Z-drift. The unsurpassed stability achieved thanks to the PSF system is prerequisite for STORM imaging. The microscope laser board contains 4 lines: 405,488,561 and 642nm (out of which the 642 and 561 are high power lasers) and a series of high quality filter cubes (HQ Blue, HQ Green, HQ Red, Far-red STORM and Red/Far-Red Dual STORM cube). The microscope is also fitted with a C2 confocal scan head that allows correlative STORM-Confocal imaging. 4x, 10x, 20x Plan Fluor and a 100x TIRF Plan Apo objective is the choice of lenses.

Overview

Component Type Description
Laser Lines 405 nm
488 nm
561 nm
642 nm
50 mW*
200 mW*
300 mW*
330 mW*
Objectives 10x
20x
100x Oil
Plan Fluor NA=0.13 WD=17mm FOV=3215.36um
S Plan Fluor NA=0.45 WD=8.2–6.9mm FOV=1290.4um
Apo TIRF NA=1.49 WD=0.12mm FOV= ? um
Microscope Base Nikon Ti Eclipse Inverted, fully motorized (stage, filterwheel, turret)
Stage Adapter Ti-SH-U Universal Holder (any microscope slide,35 mm dishes)
Acquisition Software NIS Elements AR Version: 4.51.00 (Build 1143)
Vibration Isolation Table Supertech STable Active pneumatic table
STORM/TIRF System
TIRF Illuminator Ti-TIRF-E variable TIRF angle (1 manuanl/1 motorized direction), 2x/4x focusing lens
Filter Cubes HQ Blue**
HQ Green**
HQ Red**
Dual STORM**
Far-red STORM**
EX:370-410nm DM:416nm EM:429-474nm
EX:- DM:496nm EM:502-547nm
EX:554-568nm DM:575nm EM:557-661nm
EX:- DM:500-629/650-757nm EM:500-624/658-755nm
EX:- DM:660nm EM:670-760nm
Camera Andor iXonEM Ultra 897 Back illuminated EMCCD
95% Quantum efficiency
512 x 512 pixels (16um pixels)
Single photon sensitivity
Redout speed:30,10,5 & 1 MHz
Confocal System
Scanning Head Nikon C2+ High precision galvano scanners
Detector Unit: C2-DU3 3 Standard PMTs
1st Dichroic Mirror 405/488/561/640 Nikon
Emission Filters DAPI/CY5(dual)
525/50 nm
594/40 nm
Semrock EMD/CY5 Custom 239415
Nikon
Nikon

*Nominal output power at laser head
**Custom Filters with Chroma and/or semrock filters

Details

Laser Lines:

The Nikon LU4A laser box contains four lasers as follows:

Wavelength Type Manufacturer Model Power
408nm* Solid State Melles Griot 56RCS S2780 50mW
488nm* Solid State Coherent Saphire 200mW
561nm* Solid State Coherent Saphire 300mW
647nm* Solid State MPB Communication VFL-P Series 647nm 330mW

*Nominal output power at laser head

Part List:

Component Type ID Description
Microscope Base Ti-E Eclipse
Ti-PS100W
Ti-HUBC/A
S/N:532257
S/N:2013094
S/N:551490
Inverted, fully motorized
Controller
Base Hub
xy-Stage Ti-S-ER
Ti-S-CON
Ti-S-EJOY
S/N:661168
S/N:561693
S/N:557697
Motorized with encoder
Controller
Joy-stick
Stage Adapter Ti-SH-U - Universal Holder (slides,35 mm dishes)
Piezo Stage Mad City Labs Nano
MCL nano Drive
S/N:NIK-S1649
S/N:NIK-C1649
Piezoelectric stage
Controller
Nosepiece Ti-ND6-PSF
Ti-PFS-CON
-
S/N:594808
Motorized nosepiece
PSF Controller
Lasers
Laser Board: LU4A
LU-LR
S/N:60193
S/N:54488
4 laser lines
Laser power supply
408 Laser Melles Griot 56RCS S2780 S/N:80466 50 mW
488 Laser 1. Coherent Saphire
2. Saphire LP USB CDRH
1. P/N:488-200 CW 1137970 S/N:LDP.1137970.508465
2. P/N:1170412 S/N:LDP1170412.C00464
1. 200mW
2. Controller
561 Laser 1. Coherent Saphire
2. Saphire LP USB CDRH
1. P/N:561-300 CW 1255312 S/N:LDP.1255312.175845
2. P/N:1170412 S/N:LDP1170412.C00921
1. 300mW
2. Controller
647 Laser 1. MPB Communication 2RU-VFL-P-300-647-B1
2. 2RU-VFL-P-300-647-B1
1. P/N:MPB-F-04306-113 S/N:1101C037-04
2. S/N:2RU-1123-1725
1. 330mW
2. Controller
Confocal System
Scanning Head C2+
C2-SH
S/N:32045
S/N:32045
HP galvano scanners
Controller
Detector Unit: C2-DU3 S/N:14120 3 Standard PMTs
Widefield System
TIRF Illumination Ti-N2-SS S/N:593211
-
Illumination Unit
STORM Lens assembly
Diascopic Illumination D-LH/LC
Ti-DH
Ti-CT-E
S/N:955374
S/N:602303
-
100W Halogen Lamp
Illumination Pillar
Motorized Condensor
Episcopic Illumination Intensilight C-HGFIE
Controller
Ti-FLC-E
S/N:870068
S/N:620194
-
1. Enhanced Metal Arc (EmArc) Lamp,Liquid lightguide
2. Fluorescent illumination unit
3. Motorized filter cube turret
Camera Andor iXonEM Ultra 897 P/N:DU-897D-COO-#BV S/N:X-5209 EMCCD for STORM